PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_3682_iso_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB
Protein Properties Length: 350aa    MW: 40901.9 Da    PI: 10.1349
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_3682_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.61.4e-13453148
                                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
                      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48
                                         r+rW +eEd ll  + +q+G++ W++++++m+  ++R +k c +rw +yl
  cra_locus_3682_iso_2_len_1901_ver_3  4 RQRWQAEEDALLRAYARQYGPREWHLVSERMNkpLNRDPKACLERWKNYL 53
                                         89**********************************************97 PP

2Myb_DNA-binding35.22.9e-1159103147
                                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                          +g+ T+eE+ l +++ +++G++ Wk+Ia++++ gRt+k +  +w  +
  cra_locus_3682_iso_2_len_1901_ver_3  59 KGSLTEEEQRLVIHLQTKYGNK-WKRIAAEIP-GRTAKRLGKWWEVF 103
                                          6788******************.*********.*****999999766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.68157IPR017930Myb domain
SMARTSM007177.5E-12355IPR001005SANT/Myb domain
SuperFamilySSF466894.12E-20498IPR009057Homeodomain-like
CDDcd001676.54E-7653No hitNo description
Gene3DG3DSA:1.10.10.601.1E-18660IPR009057Homeodomain-like
PfamPF139216.6E-14768No hitNo description
PROSITE profilePS5129417.9158108IPR017930Myb domain
SMARTSM007176.9E-958106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-1461102IPR009057Homeodomain-like
CDDcd001676.21E-663104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009615Biological Processresponse to virus
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010338Biological Processleaf formation
GO:0042742Biological Processdefense response to bacterium
GO:0045088Biological Processregulation of innate immune response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0050832Biological Processdefense response to fungus
GO:0000793Cellular Componentcondensed chromosome
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MKERQRWQAE EDALLRAYAR QYGPREWHLV SERMNKPLNR DPKACLERWK NYLKPGIKKG  60
SLTEEEQRLV IHLQTKYGNK WKRIAAEIPG RTAKRLGKWW EVFKEKQQRE QKENRRIIEP  120
TTELGKYNHI LETFAEKLVK QQQNFQGFLM ATPNGAFIRP DTTAPSQPTL LPPWLSNSPA  180
TSTVRAPSPS VTLSLSPSVV QSSPAAIPWM QPDRSSLPSR GINIPSRENP FIPELLECCK  240
ELEEKHGAWV AHKKEAAWRL RRVELQLESE KACKKREKME EIEAKVKALR EEQKATLERI  300
EAEYREQLAE LRRDADVKEQ KLADQWAAKH SRLVKFLEQM GFQPRMDEPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-14792789MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-14792789C-Myb DNA-Binding Domain
1msf_C1e-14792789C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009602924.10.0PREDICTED: transcription factor AS1
RefseqXP_009602925.10.0PREDICTED: transcription factor AS1
SwissprotO809311e-151AS1_ARATH; Transcription factor AS1
TrEMBLV9LXP30.0V9LXP3_TOBAC; Asymmetric leaves 1
STRINGPGSC0003DMT4000227711e-180(Solanum tuberosum)